Oxford Nanopore long read sequencing of Streptococcus suis: Isolate S... - SRA

SRX15926245: Oxford Nanopore long read sequencing of Streptococcus suis: Isolate STC85
1 OXFORD_NANOPORE (MinION) run: 15,385 spots, 220M bases, 178.6Mb downloads

Design: The rapid barcoding protocol was followed for ONT-based DNA sequencing using the SQK-RBK004 kit without selecting DNA size to preserve plasmid DNA. The libraries were sequenced using a single R9.4.1/FLO-MIN106 flow cell on a MinION Mk1B sequencer

Submitted by: Amsterdam UMC, University of Amsterdam

Study: Streptococcus suis outbreak in Thailand caused by an emerging zoonotic strain with acquired multi-drug resistance

PRJNA853715 • SRP383968 • All experiments • All runs

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The zoonotic pathogen S. suis caused an outbreak in Nakhon Ratchasima, Thailand with 19 confirmed cases. We characterized the outbreak through an epidemiological investigation combined with Illumina and Nanopore whole genome sequencing (WGS).

Sample:

SAMN29401324 • SRS13614586 • All experiments • All runs

Organism: Streptococcus suis

Library:

Name: STC85_Nanopore

Instrument: MinION

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: SINGLE

Runs: 1 run, 15,385 spots, 220M bases, 178.6Mb

Run	# of Spots	# of Bases	Size	Published
SRR19882897	15,385	220M	178.6Mb	2022-07-11

ID:: 22592815

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